NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208018_100492

Scaffold Ga0208018_100492


Overview

Basic Information
Taxon OID3300025057 Open in IMG/M
Scaffold IDGa0208018_100492 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10243
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (28.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001807Metagenome / Metatranscriptome631Y
F002985Metagenome / Metatranscriptome515Y
F020341Metagenome224Y
F042290Metagenome / Metatranscriptome158Y
F087066Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208018_1004921F002985N/AMSYVIACWRWGTPHAITANSKTNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINSNDEDLSGKELQVCDESQFRK
Ga0208018_10049210F087066GGAMNDLQKAFLRGACVTILGFAVTGLLASIFLTPDKPKDTSKFEVIAEYEECNVIRYTDPTTRWQYFLKCP
Ga0208018_10049221F001807GGAGMTVLAIEEATFIDETHVRITAVVDEMRLLYRATRYEPDEWAPALCETTITLDPEEQIPLDEDGFCSYLDHLDPDWQVLDLSEYK
Ga0208018_1004923F020341GAGMKGFNTTKQATRSSSYWVASYTKDNEDEPFAIHKKVLSYAPGQDKESLMTKYCHSLMKLNPHVWEVLVHQGPSKIPDHGDQIVIRLSREPFKGCGQLT
Ga0208018_1004927F042290N/AMTLTYRGVKYDKQEQAAKDKAWWNLAHRPWLSLKYRNLCYFPYVTGGQIE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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