NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208018_100820

Scaffold Ga0208018_100820


Overview

Basic Information
Taxon OID3300025057 Open in IMG/M
Scaffold IDGa0208018_100820 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7015
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (45.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001806Metagenome / Metatranscriptome631Y
F029405Metagenome / Metatranscriptome188Y
F042858Metagenome / Metatranscriptome157Y
F096249Metagenome / Metatranscriptome105N
F098267Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208018_10082011F098267N/AMDNDRIKQEYTEDQLFILQDIANEQRTVIEDEWDEDKYFSEIDEYLSDIAVKLMMEDHD
Ga0208018_10082012F029405N/AMGDPDFIDEQRNADILDAMADLAYEQEQAMRESNQSDWDGIEEISSAERNACDHYNERYVIHDYY
Ga0208018_10082018F096249GAGGMTPKAVERMLIDDARLLARREDQIDAELEAERQQCLELFYQWQDGLVQFESLVPFAMVLDRKCKKNRNLIRWLHKFSIED
Ga0208018_10082021F042858AGGAGMIRKAIASGLMVAANAVAKDQTPERIQKWVHDSRVKIAKAIEPKPN
Ga0208018_10082024F001806N/AMEAGKRQKRVEALEAIKNEALRRAREGSDSYEVRDFVTQAKQELAYELPDEDAFTKAMNAVLEYKKKKTNS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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