NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208018_101178

Scaffold Ga0208018_101178


Overview

Basic Information
Taxon OID3300025057 Open in IMG/M
Scaffold IDGa0208018_101178 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5531
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002985Metagenome / Metatranscriptome515Y
F013402Metagenome / Metatranscriptome271Y
F040073Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0208018_1011781F002985N/AWRWGTPHAITANSKTNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINSNDEDLSGKELQVCDESQFRK
Ga0208018_1011787F040073AGCAGVLKTFQVMLQFEAGPEEMFWQEKMIRQINESTSLDETKEIAVLLTKIATTRQIAIKGLVKDAMDLMQGQFSHQIPAQSE
Ga0208018_1011789F013402N/AMSTQLQTELNAAQAAIYTRSNLGRAFQDFDDTDIGGIYLRSDDCIVVRRDGSEQAYNREMIKVAYTNYTHRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWNYSHALGHLTSNAKLQSHWADKFIHVSEQQKLVHLLQSNQTDLGHLVAPDGMRLQDRPINLDGDMEDEQAPVMGEPWCSCGSYQRQLSNLSDFEA
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