NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208018_101811

Scaffold Ga0208018_101811


Overview

Basic Information
Taxon OID3300025057 Open in IMG/M
Scaffold IDGa0208018_101811 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4135
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F020342Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0208018_1018117F001807GAGGMTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQATIELDPEEPIPLDEDGFCAYLDDLDPQWQLLDTSVGDPD
Ga0208018_1018118F020342N/AMSAVTDNINLFDRINLAACARRRAAANVLDSTRFKGEYDTARLWMKYRLIKTTNYSYIED
Ga0208018_1018119F001120N/AYGAQRMTKDKSPLNFDKTIAGFNVTERGIQSYTKSFQLGPFQLTLNARESGVRGSVSIPGTGLSKRNIKLF
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