NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208018_102435

Scaffold Ga0208018_102435


Overview

Basic Information
Taxon OID3300025057 Open in IMG/M
Scaffold IDGa0208018_102435 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3442
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F019817Metagenome227Y
F091979Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208018_1024351F001120AGGAMTKKSPINFDRSIAGFNITEHGIKSYSKSIKLGPFQFTLNARESGLHGSISIPGTGLSRRNIKLI
Ga0208018_1024352F001165N/AMTSNNTPRIPDALDLERLQAMQVVAKMKESADKLGIGFIGGFITPDGQKFVMSNIEDEDEMNQLMPKDLK
Ga0208018_1024354F091979AGGMLIAGRHAIGNSPFLQGWQQEYMKAHGSMPPQEKVIDFLISVARNESIPMQNKQAELRLLDQMQRFSPGIAQ
Ga0208018_1024356F019817N/AMRTAKPPVGLRITQRNLYQYFLAHKKKYKNTPCYVPRIPMQNSRLDQYLNALVKLEEYGLICVDRSSDNYTGWIITDPKTAA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.