Scaffold Ga0208018_103013

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208018_103013

Scaffold Ga0208018_103013

Overview

Basic Information
Taxon OID	3300025057 Open in IMG/M
Scaffold ID	Ga0208018_103013 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3007
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008128	Metagenome / Metatranscriptome	338	Y
F025982	Metagenome / Metatranscriptome	199	Y
F041147	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1030131	F025982	N/A	LQLEMNGLQMEMLMEDGKVLDYHMDEYEDLEQKKLKLLVGKRFHQNACNAYWYWIQREKSGK
Ga0208018_1030135	F008128	N/A	MEPVYKTKLTVSFAIDLEVEYNSFGGKTVDEIAEALQDDLDDLLFELPHVEGVYTTLTNLGFND
Ga0208018_1030137	F041147	N/A	MDTTHEPVETINQWQEWYRKHRVVAEMDEPLVTKDSRENMHDTSKATTTLDGSDNLLTDYCKAMSFQKAKEYFADTIAEFANELSGKELYKAFYAAAMDNMDVVEKEYNKAKQLVDMLRCNNVAP

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