NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208018_104793

Scaffold Ga0208018_104793


Overview

Basic Information
Taxon OID3300025057 Open in IMG/M
Scaffold IDGa0208018_104793 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2234
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003687Metagenome / Metatranscriptome473Y
F021097Metagenome220Y
F035274Metagenome172Y
F056536Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0208018_1047932F056536N/AMLCYYPHEGATERITWHGGESTMLHYEVEVDDYKGDPCWIEREVQTLGGGIPTGTKELLAAMSDYYQHVVTMHLDNLYATIF
Ga0208018_1047934F021097AGGMQRNEFADACVAMTLGVGAGMLLSVFGQKLVNQHYKNTCHQRPGHNLVYSQSFLGDTYYCINSKYMN
Ga0208018_1047935F003687N/AMNYQAVEHLLTQDARLLARRDSPVIDQEIESARQVALDLFFQWQDGMKEFKDLMPFVAILQRKVDLNRDLLRWERKHEDQV
Ga0208018_1047937F035274N/AMTIFVGKEDLENALAVFKINNYHIECKPMVVYLQWIATTEQAQEYIDAFLECVDVLIDGQWVDTYGSHEQGNPVSLPDQEYIACRYILETI
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