NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208018_106527

Scaffold Ga0208018_106527


Overview

Basic Information
Taxon OID3300025057 Open in IMG/M
Scaffold IDGa0208018_106527 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1814
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030436Metagenome185N
F043411Metagenome / Metatranscriptome156N
F056150Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0208018_1065272F030436N/AMNSSLERIKEIIKEYKNTDVFDGVKLNEQIKELTSRLYYIETLRTKAHQDFERVINSKVNEGFSVARATNEANKEVPEMYKLRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY
Ga0208018_1065273F056150N/AMDSKLIKKIENFILWIGREYNVVELEDFKQDIFVILLNKGQQFILDLEKDNAIKKYVYKLCLYQIISERSRYKTKYYIPSHFCSIEDIETYKSTSFKDSAIKELIESLDGLDRILLEQLLICSGNKKCLSEKSNIHQNTIQYKFKELANKIKENWSINEFYS
Ga0208018_1065276F043411N/AMIDWTMKKFIDDTMKRRLTYNGKRVYIKALDTKKAIVSYTKEGNKGQFKVDINKLADFK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.