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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025066 Open in IMG/M |
| Scaffold ID | Ga0208012_1000162 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27434 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (85.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009560 | Metagenome / Metatranscriptome | 316 | Y |
| F010790 | Metagenome | 299 | N |
| F013943 | Metagenome | 267 | Y |
| F014900 | Metagenome | 259 | Y |
| F018015 | Metagenome / Metatranscriptome | 237 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208012_100016211 | F010790 | AGGAG | MIKMKKLLEEKVDIDDISWNHQKLLKVGGDYIHKTRDGRLWYELDDDIKKSKNRTLIKYFKEYDKARLKLQHAGAMLTRAFNLEKR |
| Ga0208012_100016214 | F013943 | GGA | VNILEQKLWNLINEASPTGTNSGLGIITGDAWPDGLYTKRGERRYVGPASLTRGMQQVDFPAADNIYGGPDSLNNERRAKRDAGKLYKYLSDPDGNSEVKANELRDDTPPLSPKQRMYGIHGFHRKQEYTIPPESANFWSTSETLIKPTTPPEGSESGGIPATPEPGSQKMGSSSGYRQVNPSGQKVFASNKKLWNQWKDHRIMGKVKGREWKGNKLVDLLPKGVK |
| Ga0208012_10001622 | F014900 | N/A | MIKLLDILNEYSHNNGSTGGAEAGEPDTGWTSPRKKRKLGVDSSKPEPWFEKGRYTQLSFPKADNPYDAAKGRGDDKSIQRVQVIKRVVNTGIKYEDFYDTIASWDKYGGQDYSMDYENPGGEVPAGERK |
| Ga0208012_100016223 | F009560 | GAG | MDSLFSISTLLKRWHTETQRKDVNKNYMIKHLTMWIKKLEELRHEIMMRKDR |
| Ga0208012_100016228 | F018015 | AGG | MNKKHEFNMNKKWREFRLDEKLNEENESLWTWVYKGFLGGFKKAEKKGGGSVSLDEVARGVAFLVKTEFGHHAKNDFIKSLKKYIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |