NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208012_1000193

Scaffold Ga0208012_1000193


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1000193 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24242
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019554Metagenome / Metatranscriptome229N
F052199Metagenome143N
F060044Metagenome133N
F094416Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0208012_100019314F060044GAGMKLTSIIKEIRYPATVDDLTMSFLYMGVNNAAEKILKDIKKRTGSNANPISLQVIEGLTSVNKQLMKKKKLKGQEALSYFLKIALKEFNTDAPFISSLFKRYRLKERDYR
Ga0208012_100019337F019554GAGGMSLDRLKEINLFEGKTLDEIFKVIYSQSLEEREEAMNTFKKFKEMVEDKEDLFMSGDKPHPYLDSAHKATENLIKMITASHKLLELESESKDSINANDILDLLDQEGIAPKRFMPKSDEESKEEPTIVEFPKLSGKKV
Ga0208012_100019338F094416N/AMFEAISAIFIILSAGLGIALYRSINRLGFYEDIYGDMYGRLSELRDNIQGVLSREIYSDDPVIRSFIGQLQEIDYYLQQVDENYRFNTLGEDVDES
Ga0208012_10001935F052199GAGMKLQFLLERKARKKAEQYDDINNMSELKKLMKKLGAKDNKARTVSIDFGRAYVYTYDTPSKINYNDYGDSPMAAKGYWKKGKLISFDKKLIVKYQRSGEGSDR
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Institute for Fundamental Biomedical Research
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