NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208012_1000329

Scaffold Ga0208012_1000329


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1000329 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17745
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001711Metagenome / Metatranscriptome648Y
F044800Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0208012_100032910F001711AGGAGMAKKIAEKAVESESAVKQVEIKHLRSMKDEAGKDVSVVDWTESKNVDEAISQAEADLAVAEARVTELKADIVEYKKIKG
Ga0208012_10003292F044800AGGMSVASTNAWKVKVEETIQTGIKNEFYSSLPIFRSRDFQYRGNQFAILKGNNSEPHNTMYSLVGNSYNLTLEFFMSDLKRNDTTIKAFFNQVSRIEETFYSLLELDPLFNVTINGINYDDDIEFNGYRKATFNLTVGNVR
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