NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208012_1001573

Scaffold Ga0208012_1001573


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1001573 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5990
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003135Metagenome / Metatranscriptome505Y
F078583Metagenome116Y
F093716Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0208012_10015734F078583AGGMDTLRNVLKSPIGTALEGALGILITLWDKLPEIIRILIGIATFIHIVVKIKKDMK
Ga0208012_10015736F003135GGAMDIFGIIETLGIPVAVAIGLGYALMYLIKFITKDVTADIKNLYNIVVKLIDSNREAKDEVKKTMTGMNVIKDIMIKLFRNGKK
Ga0208012_10015737F093716N/AMEKNDLLKRIEKLEEDSHPPVSWKSKIENIIKRVDELTKLYGEIITNLMKQRK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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