Scaffold Ga0207887_1004201

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207887_1004201

Scaffold Ga0207887_1004201

Overview

Basic Information
Taxon OID	3300025069 Open in IMG/M
Scaffold ID	Ga0207887_1004201 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2210
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.9853	Long. (^o)	-145.0838	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040141	Metagenome	162	Y
F041246	Metagenome	160	Y
F093971	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207887_10042011	F040141	N/A	MRCKSHIFIFKTDKCMKGSYDFHKKTGICYFCMRQLKKMYGLTESDLIKNKFYKKFIS
Ga0207887_10042012	F041246	GAGG	MKYVFGVNKRFINSKSEKHNKKGRKYFFCYEFDMESRKFRRIRISLFKAIYYKITFVFGLKSKKVTNVYCKDCRKSYNCYVNFWDKDISCPNC
Ga0207887_10042014	F093971	N/A	MSDFPXWWNTMSEDKKSKKDESENFIDTLKDMLSDTHQDEAWNDKFKATVRKYFDI

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