NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207887_1020505

Scaffold Ga0207887_1020505


Overview

Basic Information
Taxon OID3300025069 Open in IMG/M
Scaffold IDGa0207887_1020505 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1045
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036732Metagenome169N
F060030Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0207887_10205051F036732N/ATVVTGTNTRQEGYAPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVFKYSKRRVSMLGQ
Ga0207887_10205053F060030AGGMVIQKLLIEEGIKRGLKESQKYSVSVLGYDFIGLVSRLSVFFIMAFLINSYFIATIQGGIWLNSLGGFFNMKFPTTLPEWLTQLFTTGYKGFTFWNLVTT

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