NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207887_1025549

Scaffold Ga0207887_1025549


Overview

Basic Information
Taxon OID3300025069 Open in IMG/M
Scaffold IDGa0207887_1025549 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000930Metagenome / Metatranscriptome830Y
F024417Metagenome206Y
F032040Metagenome181N
F074025Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0207887_10255491F024417AGGMKLSNFLDKYHSRHDKIRILEKMLKVASSNKRQAISLKKARNIIFNHKDVKKIS
Ga0207887_10255493F074025N/AMMNLEYKIIYRIGGDIPINPSWIGDQMQTAVDALQVKINEKNLHGTHTLELCFPEGWGK
Ga0207887_10255494F000930GAGMTYKVIRWKTDGTEEIWTAPKKPTLDQLYKLIGCGTIERQSGYDKDISNRTFDMWMDEESKCKGPEFIKKNERATSAWYEWQSRTGHQSLPGDFIAGNTVIYKKINDEPRI
Ga0207887_10255495F032040N/AIYPVCQDAILFSCIAGTKTFCKITIANIKKLGYKFETEKEEV
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