NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207887_1030866

Scaffold Ga0207887_1030866


Overview

Basic Information
Taxon OID3300025069 Open in IMG/M
Scaffold IDGa0207887_1030866 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)861
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018553Metagenome / Metatranscriptome234Y
F022673Metagenome213Y
F072444Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0207887_10308662F022673N/AMKKEQIVSPRVEIAEKIHEELLVSLELERKLLKKELTLQETMTERVEVRKDLVICERKIKDLTEQLQKENNRSKGTKWNKQP
Ga0207887_10308663F072444N/AMMPERENNAFWEIAEIIEREMSVLRKMRPVGPKEKALLKKMMEDKEKEHEKRTNSQP
Ga0207887_10308665F018553AGGMLCIPRLRIAILNEEIALWEKRCGNEPDYIPYLGYIRTTLKGRVKELEDQEKELDKQEKN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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