NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000054

Scaffold Ga0208667_1000054


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000054 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49644
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (74.39%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023453Metagenome / Metatranscriptome210Y
F025145Metagenome / Metatranscriptome203Y
F038861Metagenome / Metatranscriptome165N
F076507Metagenome / Metatranscriptome118Y
F099871Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100005428F076507AGGAGMSLILSIEEAKEKGMWKLVEQLERDLERRQLLKMAPLEEVKDKHESTMWQDNIDDDWED
Ga0208667_100005466F099871GGAGMGHFIKFTFTAFDKDFSVHVDDKDISTPVKMLNEKSRAMGKANREFLDKFLDDGIDPFPGWWTESSPTDFYWSTGNNFD
Ga0208667_100005470F038861N/AMNKWTKYKTSHEGVGTFVSVWLDEDNGLVKRTFDGDHCGEGISKRTSKADILFKNEVYWLTFPELYRSKFLPELIDIDEESKTIIQRYYGPNLLDYYPDKFPISNLSEQILEMYRFFHEVGVNKLNGALSNMSLNGDQVIAFDFKWARPAPKANAKEVKAFRKWLTKLDPDLVEELVKIKSSSVVSDKV
Ga0208667_100005473F023453N/AMRIGEITKSETLYELEKWAKRNIPLLEDGSMDAERLSQTLLQKAVNKFKKQPEPTEERTKDMEDYMSKLEDKLGNDEKVKTPIIKKFFGFFRAHPRMIGLGVMILMLLSPMLPSIAVVGLSLEKILSMILAGLYAMDIASPGVKTSIEL
Ga0208667_100005475F025145N/AMYLSYYLTFDTDLWYNCLTMKIKHKPQFNIEKVTAHYTKKDGVPVHYVCTSDLDESDRPFDIYYRDTPHPEHNNFYFGLYADDEDRMMICKADSIEKYQFGMISDQDEWVYSRSHHDLVETDSGNIDGGRKYIKRGGDLDNQKHVVAKIVDGEFVTGEKNV

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