NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000171

Scaffold Ga0208667_1000171


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000171 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30236
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (90.20%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011269Metagenome293Y
F011396Metagenome / Metatranscriptome291Y
F028790Metagenome / Metatranscriptome190N
F050343Metagenome145N
F076036Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100017116F028790GGAMWILVWLSFIDNRFEYYQLGTFGTEAHCNKAKAKAEVMVKNVGQAVTCFAIDRN
Ga0208667_100017122F011396GGAGMNDIPDYFAIAAKIIERAERGLPQDRWMRGDHEMEALVRAYIALLRTCETMHADMIQRGSDAMDIS
Ga0208667_100017124F011269GGAGMEFFTAFYIEYAVRGMDIQSYILLPSYEACQVMIRDNEDMAEYMFADGDVNMWCIKTDKLSKSIAPVLRPE
Ga0208667_100017136F050343N/ALDLDLQKKEFPKWLRDRIAAGTARVYPHGTFKVRRGLTLHDKLQSVTTLEELEGFANRRKYGAQVEPWAEQERREILWRKTELTNKRKRR
Ga0208667_100017138F076036GAGGMTIRPNVTLAVDQTRRKLIEMQEQLNEDAWQVIMDDYTHADAQQAQYIDNALELFSRLIDELERAR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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