Basic Information | |
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Taxon OID | 3300025070 Open in IMG/M |
Scaffold ID | Ga0208667_1000259 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24665 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (73.68%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015477 | Metagenome / Metatranscriptome | 254 | Y |
F041743 | Metagenome | 159 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208667_100025913 | F015477 | AGGAG | MEMEIAKAQNEVKCAKADVVKASNRLAFVSSAIHNLKKRCPQDIKL |
Ga0208667_100025918 | F041743 | GGAG | MSGIQTIIDNATYITIDDQRITGSSISRSGQYKTAERGPSPYAFTVGMHNGLKYSTNRALLSELNTLGKTVEANISLNNNTNMNYLTAYQGDIEQAQLNNITLNSVYGSEIYVDCSGATGSGILFKKGDYIQPKGNTDTYRYPYQVTSDVTFSTGANVTIPVSRPVLSQTGVALTSGGIKVGNDVRFQVKCVTQPTYSVVPHDLISFSADFELIEVIT |
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