NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000754

Scaffold Ga0208667_1000754


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000754 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13069
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012529Metagenome / Metatranscriptome280Y
F049285Metagenome147N
F058518Metagenome135Y
F081883Metagenome114N
F087886Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100075411F049285AGAAGGMKLIKVRVNRTIEYEVSVGVDNDHKYEQVRDYLQTIDWDREIGISPQNYKQISDYYDWVDWEEA
Ga0208667_100075414F012529N/AMIEDKTYKIKVGDYHDAVIYVYERHVKCLNPKEEDVNKRKYKHWKEVAAVIPVNNDFDDYQDTSGRFYTNVRVVVDALTELYGSSPDYEMGVSYTMNTHQYINC
Ga0208667_10007542F087886AGGAMSNFRKIWKLDLMDWDNSENKFVDRYSTYHTSKKKAVERAKSYIELIKVDKLGSVNGRTKNSVSVHSASGDTLGYICSERLL
Ga0208667_10007546F058518GGAGMRFKEIVISADDLECDETDTIHRAIKNHILDVGIATRKTLTGFNWRLDVRMRMDNDDT
Ga0208667_10007547F081883GAGGMTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGTTLNDASWHQTADTVSNYKLDDERELNFDEEDNLR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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