NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000806

Scaffold Ga0208667_1000806


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000806 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12571
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003637Metagenome / Metatranscriptome476Y
F020921Metagenome / Metatranscriptome221Y
F050424Metagenome145N
F072428Metagenome / Metatranscriptome121Y
F090413Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100080613F050424GAGGMGIEFENIYKDRVIDTIQKLLKQNLASIPVVFDEHRGQESFLIIPEADAFIDYASNVHIREFTTVINYQLRKGGEYTKENQLNRLTMIAEVVKRLLFDNRNYESGNITNWYGGIVSSVEYTRDEEDETISNVIITFQCNTNEVIS
Ga0208667_100080614F090413GAGGMKYKHIKGLQLQKPSYLSTSNQKIRELLAGGEVELEKENLEEFESLGVQVQPVKKQKPKKKEEK
Ga0208667_10008062F003637GAGGMAKVIAEKVQEAIVADAPKMVEIKHTRSMQDASGKDVEVVDWTETKSVDQAIADCETHKANLEAQLTECEAELADYIAIRDAE
Ga0208667_10008063F020921GAGMATPAVPTTNVGIYNHLREATDCNENTNLSLASLCNGGSFAFDNSFGAAGGPAQSFDVIGGTNNPITTTPDSVNLYDDIIGTAPFNLANTIGGKYT
Ga0208667_10008068F072428GGAMDLGETIKRLKELSAILQAKTISDREKEYYLPEMFRLIDKLEVPQLIGEFSNDYIS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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