NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1001264

Scaffold Ga0208667_1001264


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1001264 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9465
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010277Metagenome306Y
F019561Metagenome229Y
F031295Metagenome183N
F050005Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100126411F050005AGGAGGMYSKTNYPLYHEFKLMKVGNVLLNTNIDDILDQEIEETTIIINKLKDINQFVEA
Ga0208667_10012645F019561GGAGGMTDKFSKPILRNLRTSLQDILKAECFGDKIPFEYTLGNCSFDEDQAKFQLIVTFKGNSVEDIAKKKQKEDLEHYAKYFDIDLERKHPRYTLVGYKVKSRKLPWIITDNQKSGEYIISDDQAKKLFGKQDVDTFLKGQREAQANG
Ga0208667_10012647F031295AGGMVRAEEKLHGVISRLTDEYNGYNIRKRIKKSDLQNLVHDLEVVDAELHDLKLPPITDNIKLDNKVCLFYIINELKDIITEPNVEDVEKRLTDFHNTLVFNLGINALHNHKNDWEDR
Ga0208667_10012648F010277AGGAGMSRLKDKLLEVELFVGEKLQDLTNEQVIKEVRKHFGSQMFVDHAEELLHEFQQEVNLERLQSW
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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