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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025070 Open in IMG/M |
| Scaffold ID | Ga0208667_1001357 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9045 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F057394 | Metagenome / Metatranscriptome | 136 | N |
| F103357 | Metagenome / Metatranscriptome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208667_10013572 | F057394 | AGG | MNIKRDIEIRIRVLENKLQRSIPAARNNEIRGEIMGLKWVLERL |
| Ga0208667_10013574 | F103357 | GGA | MKTATDPTTGKKIYWDGQQWLPLKTATNPQTGAQVGIAGGQTFSLSTPTTTPSVSDMFGPEMAARETLRGELEQFGPEVSRRAQNVMGDDPSLLRQLYQAPELALIGGSQAARAGGATLATYISSWIPNSVKEGAEAAYDSIKDTQPFRLAAQAASLGDAGYQAFKQRMPEAAERFESAVDVGLLFSPRPDIPRLDIAKRGAQKEATRLVRENKKDGVTLLLEPVTPEMRDVFEEKGVLRTKTWEPNDFDNLVIDTVTDMKGVKPNRSYTYNYRAVQKEVAEAKQATDKMIVAQNKAINSDKFLGDMQGAIDEVLKDDIVRIATGDIQKQLAELSDIVLESVQTRGSDLVGVLEVRRKFDDLINNFDGTPNAKSIAARKIRGVLNDTLKANTRGDKLHNLLTKQFHGITAMEDMLPKRNAEARDVFSRAVRNLQSVDLLPNTVLALGATGTAATGALGGALPALGAGVLGATTYVGLQTLKPRNAARIYASMLSAIDKAIPLTKGTALKELEMDRILLVDLIDQTREEIKEEQSE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |