NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1002862

Scaffold Ga0208667_1002862


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1002862 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5416
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005195Metagenome409Y
F056174Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10028622F005195AGGAGGMSLKALLRAGKELLKAKKPSRSAGRSEDEISDEFLKRRMELAGEDDAVRLGLLSGKKAQPSPATGTKPSQQTGQELAVRELKNPPVVLKKTKPLQMGDDMAPAFGSSTYDWAMRMGRSKYTADEWLDHLTSTRKVNFKIFGKPAQKTVREQKRFKYDSGPFAGKEVNVSKEELFDSNLAVFNEAGDLTGGLLYAAKKFGLKLDANEVGAMLKLNPINRLQPIELGVNKAAQEAFDVAAKNARNTVRDLQVKYKDRDNLKYELDQIQYYLKADSGVPSRAALKDINESLKMVQKELAIDEKKALNKVIGEINNKVGPMQATKTKYGTETNYTLQGGKDYRETIFTLPEDIPTNASLRNKGGHFTDVIGDTNNIYHIRYDTRFTPDGKKVFMINEIQSDVNQSIAKSLTKAQQLSGEQRLNPFNADIELNLLSSQRGKMLKDLDDAIANNEFGRVNAISSSLKDVNTKLKRISSQRDYSSNQKDYFPMVEADSYGDHAIKYLMQKAARENVDYVAVAPFDKVSFRQGYKAGNERFYGYANGKGIGKKGKAVIPDVMSKNARFYGSKAGPTKISLSDPTKPYKSVSSDTFKYPKDHPLKGKEIKSTYHSSSGMNPEKGTKNIPDGDPRLYFDAYAIKVVPLMRNTQKTYKSKGGLVVDMFKPIRYN
Ga0208667_10028625F056174GAGMRKGLSGGVKSGPPPKKGPNPQGIKLKHAKKLLRKAVRKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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