NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1002926

Scaffold Ga0208667_1002926


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1002926 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5351
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004603Metagenome431Y
F015990Metagenome250N
F022856Metagenome212Y
F027830Metagenome / Metatranscriptome193N
F062678Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100292611F062678AGGCGGMTQQDQNALKKLKRKYPGLPIVGSPKDWERIEKMLSKEDLKLYKLITKRGK
Ga0208667_10029263F022856N/AMTTDLNKIVGNFRDILGNERDKLYPQMPNTRVGDAHISIHIHMYRRANPLRGFDSLESAHACAGER
Ga0208667_10029265F015990AGGAGMTGKGSGRRIEDINKIRNNWDSIFKKRDKKQITQVTIEFEMPGNPNINDMNDQVEKMLKENKIVYTTITKYI
Ga0208667_10029267F027830N/AMKEMIMTNKITFNIAFGKYSAHYRDRGFGGQLPYISETYSKATGEGGYLLRDENDMHIAYITKDGKVEA
Ga0208667_10029269F004603AGGAMIFSININGLVIDWCYNLDCQDKQYHKTWIPKSRDIQIITKDLNGLTIGEVKKIILEDIQPDITMVKEHNNKLARARRIKA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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