NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1004099

Scaffold Ga0208667_1004099


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1004099 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4211
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009459Metagenome317Y
F012863Metagenome276Y
F022875Metagenome212N
F048912Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10040993F048912N/AMRDYDSYLTDFLDYEDDDGLTDEEREELKDLYEAWVIDQYETNKQ
Ga0208667_10040995F009459N/AMTNREITLEPSVMIEELMFYIHQEEMGGDCIDPDNRFFPLYLELQKLLDKLNNKRHDLYVSVKNDESN
Ga0208667_10040996F022875N/AMKLNLTEETKDNIRVRAKQHINSTDPSTDHWDSIETPDGFVDFNIWQDDDYKNGEWIVTCYDTYCSTDDGCVHTDTSTFKRLAL
Ga0208667_10040999F012863N/AMKNYKEYLDYCQSLAEDINESYPDTIEILDRIHEIADGCQYVIYYSKAWDLVNMMREYEPEFFSVAVEEVRDNGFEFEGDIDRHMTWIAFFLIRNGIYSAYQQKGSKEVA
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