NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1004380

Scaffold Ga0208667_1004380


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1004380 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4005
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007526Metagenome / Metatranscriptome349Y
F043385Metagenome156Y
F058993Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100438010F058993GGAMEELKEFLKQEIADARVYFKDTEHFEQVFDEAGWTPESMRVFDVGYIKAFEAVLREIQNKHE
Ga0208667_100438014F043385N/AMIVRKVKDLWIVQARHSQQIVFSHTNRMTCYEWMFKGMHYA
Ga0208667_100438015F007526N/ALKHLWFNLPHPTPKKEVRVIKVSKLGENHYECKKVRDDKNGYSTYSSNWKTFDEALEFARKLMKDTPEFSIIIN
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