NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1004425

Scaffold Ga0208667_1004425


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1004425 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3985
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000256Metagenome / Metatranscriptome1448Y
F005590Metagenome / Metatranscriptome395N
F009460Metagenome / Metatranscriptome317N
F051865Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10044252F000256GGTGGMADGVSGIGSAPFNVQSDIHQQTQTRERIEAHLVEQRVTKEHRANHTHLEALREQKLDLGKAYDRFGTKTTADRQQGTNINIEV
Ga0208667_10044257F005590GGAGMNEQMTLLDRWKEMATIENARMHRRMIGRDDMHPYSHKPWAIEALRKEIERCLRRHGELSVGDLCSMIEQDVTHIDLGLKTLRERRRIVKTSYIHGQQLYRVSTKDERRL
Ga0208667_10044258F009460AGGAGMAKWDLTKIENCSTVGDYIDEDDTRPDQPTPLMIVRSINRKADIMRMDAGRGPERRTMKQRAEEIMSLCSMLERRL
Ga0208667_10044259F051865GAGGMTKTTWIALMVFSSPYECADFIEKYKANLYGPVQCVIQYEETNTVRPKRKPIQEKNDG
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