NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1004808

Scaffold Ga0208667_1004808


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1004808 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3756
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006845Metagenome / Metatranscriptome363Y
F012117Metagenome / Metatranscriptome283N
F013088Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10048082F012117GGAGMVDILGGMSSSNESQQVYLAFKTSHQQFFANGETPVDFQYLQLDPATFKSGWGRYTKADGFEYAWDDKFGVVNPKPADDYKRAFSAWVMPQGAQHAYLWQRFTVAESRAFNTILGGFWNQMDASADSLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRAAEFVIPQWYIDQEAPVEDTFKSPNDGLAEKVQEMVDKNELSDDDIPF
Ga0208667_10048083F006845GAGMKSYKKQMDLNSYLLQEDFEEFCRKSYERISIACEVFGIVNDEDYYSFKERCYTQLEADYLNSIDKTIH
Ga0208667_10048087F013088N/AMDDKTKKALWISEDLHKEIKIFAIQNNMTIESASQMVLKLGMCSYKDSNGSK
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