NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1007068

Scaffold Ga0208667_1007068


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1007068 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2835
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011200Metagenome / Metatranscriptome294Y
F021880Metagenome217Y
F095320Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10070684F021880AGTAGLDCPVGTKQMVEVFDCPYISKANNKKFQQDLIKYTKETKCCEKENCNHPKIQSDLKINQAFSVIDDSINNLFKTYLGTDNFKFTKKNVWGYYASKDSQLQSIVHNHMFKKQKGLQLSAVMYITPTKLGTDFTDFKIKPEINKWYLWHSGLFHKPEDGVTPKDRIVLALSSVISI
Ga0208667_10070685F011200GAGGMDILIPLTIVVVVLVWSVKRFKPELWSKAVALFKK
Ga0208667_10070686F095320AGGAGMKTTLQKCYEKMAMIKHNSDQLRLMAGKFDNGEPAVILVIDKDGGGTNVTPVAIMLDQGLIDTLNPDWEYSKKIYKVIEDATRIDKRTKVGDFAGQFIMIDELFDRADF
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