NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1010940

Scaffold Ga0208667_1010940


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1010940 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2064
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010571Metagenome302Y
F059441Metagenome134N
F083384Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10109403F083384AGGAGGMETNKLTNFVIFKNNKRLDMIKDIFVEGNAFSKMNVEQREKEKNKHKTHKDNYVSVNVLSEHMFIREGK
Ga0208667_10109405F010571AGGAGGMSMNTRQAIYTENLYEGFYEKHYKELSKTSDDVEWIENEAMRLAEIDLDNFEMEG
Ga0208667_10109407F059441AGGAGGMKTWSSTIKYTVFDMGRECETEEEYKEWVKETFILDHDIYLTDNEITNIQREELYNE
Ga0208667_10109408F003976GGAGGMSRTYNDYYFEKEDVLDTLDKLDMSVRFLNVWVNEPMGLENAKYVLEKNANQKFKWFSRNMVKELVEEEVRXKYMR
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