NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208667_1012386

Scaffold Ga0208667_1012386


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1012386 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1885
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007723Metagenome / Metatranscriptome346Y
F021182Metagenome / Metatranscriptome220Y
F022080Metagenome / Metatranscriptome216Y
F031507Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10123861F022080N/AMINETHIGLVRMNESETILNGVQYMLSKWERNLGDTLNIDGVKWRVGIIGDTRNDVISALNKIIKKQNSIINKKKYQESKKEKMIFNEILNNIMKDINL
Ga0208667_10123862F031507N/AMIKVNDKIKFENKYGQIQEGIVTDNNYQCEFDADLNGCIRVSVDYGSSIIGTVNTLIDKSQILKNVKL
Ga0208667_10123863F021182N/AMSKLNQRYPNGYMGKIQYWTSKLNDEVMNTKVPNLKEIDRIHSKLDYFIQRQWDSVVTVK
Ga0208667_10123864F007723N/AMIKAIKSKLLTYLFKDWVMNETDLETLKVSKQFIKKREIQITGHVPVMGFRSHTNQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.