NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207896_1000050

Scaffold Ga0207896_1000050


Overview

Basic Information
Taxon OID3300025071 Open in IMG/M
Scaffold IDGa0207896_1000050 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-36 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27563
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (10.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011351Metagenome292Y
F017932Metagenome238Y
F068226Metagenome125Y
F077934Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0207896_10000503F077934N/AMQSKWGWYNILYSMSNSILDIDKITKVPIRQLLTYLAFTQDYNNTKRNNYDNV
Ga0207896_100005037F017932N/AMTIKPTFFNTRKERLYWNYTDTNNYLFTIIFDSGAELNFILRDLKKNNNIVNYIYKKLHNRFSNILEIHTDKISLIEYNYLKQYNTPSVIKIC
Ga0207896_100005039F068226N/AMKKTRILRALKKRDSKDFKEDSVLSFKDEKGKDYFVAEQHHYLNIITNAINKVLGQAFDILDDVKLKKKILKGLNNEKK
Ga0207896_10000508F011351GGAGMELKKYIEATSGLITKSIDHLQLIEYKDKELDFAYGLEEHHTSFKRLFKQIYRMIWR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.