NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207896_1003370

Scaffold Ga0207896_1003370


Overview

Basic Information
Taxon OID3300025071 Open in IMG/M
Scaffold IDGa0207896_1003370 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-36 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3000
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020604Metagenome223Y
F106101Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0207896_100337010F020604GGAGGMIRLTDMTDKPTTPEEWEQWRRDRCQARLDAFNALEADQQAAIRQTFNALEAAQTTLSECQDLWLSDIKELDHALWHLRSLAVFDPENVDL
Ga0207896_10033705F106101GGAGMKATIKITQRMLNKCIIDANKSVVELFSRNLAHRGYVNIDNGAKQVVRAVYDDGSGYTETEIRLYRRPRGDKLLSIKGLSKRATAGDVVTIEYDDKIGAVVRVAAALQEIVEVVE
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Institute for Fundamental Biomedical Research
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