NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208920_1004810

Scaffold Ga0208920_1004810


Overview

Basic Information
Taxon OID3300025072 Open in IMG/M
Scaffold IDGa0208920_1004810 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3185
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.61Alt. (m)Depth (m)105
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019821Metagenome227N
F021526Metagenome218Y
F026851Metagenome196Y
F081221Metagenome114N
F087026Metagenome110Y
F105104Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208920_10048102F019821GGAGMTISNQTTLQELIDLGLFSAADVEKFNNKLARGADRAARKALVEGTMSAIKALIVSEAHDGNRYWSVKPAAHSLGFMSYIETDRGTILKALTKLTEEGYLTKVGLKKVDGKLTELDRTQVNAFQLRYIVTPVEEADAAVDEEAK
Ga0208920_10048103F021526GGAGMRYFSIDYRSPPSGMGQIIDTEKPEKVGDQYNFILIDYGSNPHEDISYVMTKYFYSEQSAQEGWAGPVMPDIFQFLRDQKVTHVCDLELAYEYEGDRPVLDYRGLFTLDKWIEIISSYL
Ga0208920_10048104F026851AGGAMTQQQIRQLLKDPTNMTPLEQAEVGRIKQAYFSAVAQETEAFISAKEAYEDAREIMDVIDRGEREVLMQLLKNMRDCERNMTIIATELETHFDISA
Ga0208920_10048105F105104AGGAGMLHRIYYTNPAGADNYMIVPFDEIKGTVAFLESLDYEVVAYWPIEAEA
Ga0208920_10048106F081221AGGAGGMDEVLHALYNILILLTGFSAIICASLAAVAITNITASSMISYRDDKLLLAWALPSGLFFSGLLMVLMGWT
Ga0208920_10048108F087026GGAGMKFKPGDLVEVESTQTTGWGDEHHKHLVLVLKTYKSNRPPREQHYPLSAYLDETSGKAEELYEVLRDDGKYLKLGLKDYAWPGSRRTSRLVQETKK

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