NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208920_1005190

Scaffold Ga0208920_1005190


Overview

Basic Information
Taxon OID3300025072 Open in IMG/M
Scaffold IDGa0208920_1005190 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3060
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.61Alt. (m)Depth (m)105
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007550Metagenome / Metatranscriptome349Y
F011494Metagenome / Metatranscriptome290Y
F081424Metagenome114N
F091857Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208920_10051902F091857AGTAGMKKIICLVGAICLSGCVVTEKEVVYKKISFAGEGGVTTLYYPPTWQKFLKPIDDGTPKTMLVRFGETLNAQTE
Ga0208920_10051905F007550N/AMKGLLFKGLLLEQKFVILFAVMRDKMKKIISLLLLVGAVSANAASLELIVKKQKTLPNGNAYGLESGIYFELTDLEPFVMYKLQYSEDLKSWTDLVHLGTYKMAMTSPYWTWKELPPYQCFFRIVVAW
Ga0208920_10051908F081424N/AMRDRIELEEIFEADPQARAEFNAVCDQWQNEAIAAQDKEEVCWCKFFESCSLCFGKK
Ga0208920_10051909F011494N/AMRKYSVVDEEGVVRSFTQNVGDADHSALNDAIDLAQCAGEDVVEHLEDGTRVVVWSIDDAADEPWDGFNSDAEADGDALASAGWGTDEDYGG
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