NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208920_1009489

Scaffold Ga0208920_1009489


Overview

Basic Information
Taxon OID3300025072 Open in IMG/M
Scaffold IDGa0208920_1009489 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2206
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.61Alt. (m)Depth (m)105
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014465Metagenome263Y
F024106Metagenome207Y
F029745Metagenome187Y
F077179Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0208920_10094891F014465N/AGMVMIGALVRDCSKIMKIVTGYKCSQRGEYIQFAGDHQTAWYPLDSFEILSLEE
Ga0208920_100948910F029745AGGAMANKAPRVGDVVKSRVTTESVAGFIVGKEGIHVWVRFFDTALEGDSWDVFTRRDTLEVLSRANAS
Ga0208920_10094892F024106GGAMEESTFHSSFQVGDLITLKHYGSGTEPAPIAMVVSLSASVFDRIMIQFFDTSRAEMAAPGHWKVVSRNENR
Ga0208920_10094898F077179GGAGGVKPNDYKPGDLILFFSGNSRFYEGPEEIGWIVRRDYDDPSEPAVMVGFPEPNKNGLLHYYDVELREWEKAGTIEVKRG
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