NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208668_1000163

Scaffold Ga0208668_1000163


Overview

Basic Information
Taxon OID3300025078 Open in IMG/M
Scaffold IDGa0208668_1000163 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16898
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.61Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022631Metagenome213N
F051463Metagenome / Metatranscriptome144N
F080512Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208668_100016328F051463AGGMETVSAEEKLRDGLLQEQISQARIELIKLLQDDKESGRSWVAIPKGSNNRYLKVATLKRVLRDKFNHTLILESKIKHDDMNRVIIEATLSHKNGGFLSSGLAERWKDSQSSNVQKQRAIECCQTAAWGRCIKSLLAVGYDISTADEIDRSIESDINKQIDKEIN
Ga0208668_100016334F080512GAGMEYNCDKIAKSDYGEQFLNESCSIAVVFLKTVNLIQGWQLDTELFTKLKVGLIIKTIMNKYAVLQIWKLITYLNLKKTQRNILKIRQKKDQRYYLLYLIGCSIVIMIQAKYLTMDCSRCLKTKDKLWWFSSHSHSAWDDHFYCKDCFRRLFKLLPEKIKLTFSGYKGKESK
Ga0208668_10001637F022631GGAMRILRILGSTALIITFITGVWFIDDRYVDAKEVQSIKEQIYLRIDTNEYRELTKQYYELKKLVRENPESIELKEQLREVEKERAELKKSIDTKLE
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