NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208668_1003301

Scaffold Ga0208668_1003301


Overview

Basic Information
Taxon OID3300025078 Open in IMG/M
Scaffold IDGa0208668_1003301 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3963
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.61Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023368Metagenome / Metatranscriptome210Y
F058216Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0208668_10033012F023368AGTAGGMRSVIFVKEQEKQMHKYNKATTKYKDVLSDDNIFKKLDKLYDETNDVQTIRDCESLFPTLSHLSMPSMCCGWESEEHFNNLLEKYKIDLTPYVKDDDRITTSIKSEIADEMFNLVSNGKYKKRNLIKVLREKFKDVNAGVIHRLIKKNLSLRILEIDRTYKTKPYVIKGKYYIGG
Ga0208668_10033017F058216AGGAGGMPIRKTIGQLIKEKHWSVDRLVVAINITKEDIRKWEKLNKQYKKYKR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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