Scaffold Ga0208668_1016684

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208668_1016684

Scaffold Ga0208668_1016684

Overview

Basic Information
Taxon OID	3300025078 Open in IMG/M
Scaffold ID	Ga0208668_1016684 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1522
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED123	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.61	Alt. (m)		Depth (m)	250
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002601	Metagenome / Metatranscriptome	544	Y
F021117	Metagenome	220	Y
F072243	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208668_10166842	F002601	AGGAG	MIKLIVFSVLLNTGEIQAVIPDDTKIERRRRNGKGKRDRRRGGSGLR
Ga0208668_10166844	F072243	AGGAG	MGLLDFLTKPVNPHRQNFDEYDIFLAERNVKNVSYKDWYNYDDAYAYYRETGIDPYDNKSKHWNSKFKHPLSPERFIQDKENNKWFDTIENKFVNEEKVAQQAIERLDYLESMPLNGNKK
Ga0208668_10166845	F021117	GGA	MEIKRDDMFQATRFLNLIVGIMNIYLYTLGGGYHLLGIAMLNVGVWAFTRGIHK

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