NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208791_1001725

Scaffold Ga0208791_1001725


Overview

Basic Information
Taxon OID3300025083 Open in IMG/M
Scaffold IDGa0208791_1001725 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7868
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052604Metagenome / Metatranscriptome142Y
F074740Metagenome119Y
F079332Metagenome116Y
F084724Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0208791_10017251F084724AGTAGMKLSNYEQNVILVALDHMEEHLEAIELDGCITEDTYKLRMEAVNTARTKIKNN
Ga0208791_10017252F074740N/AMKNNKVTKVEHIWCEKNDRWIYLEYNEDYKILGMSFMQGDEYDVFKHNYADNDPGLMEFYETMLYTFPIEQKSVDRVSFINKVMWAYCSADQIRAKY
Ga0208791_10017253F052604N/AMITTKNQAIQFLTTMQHLYPFVHPEDDLTQIDPPFTPEQVKYLSDCFDQCYHQLTDPCGVILDEIRPKMQFFNPKTSIKL
Ga0208791_10017256F079332N/AMTTTNEQLSNNAGILAQQIAEVTIDYMVYTISHQLEYAGIDLDGDDYYDMLELITNTTIKNIINTLNK
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