NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208791_1003018

Scaffold Ga0208791_1003018


Overview

Basic Information
Taxon OID3300025083 Open in IMG/M
Scaffold IDGa0208791_1003018 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5322
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005195Metagenome409Y
F056174Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0208791_10030186F056174N/AMLLEKKLTQRRNNSLSGGVKSGPPPKRGPNPQGIKIQDAKKLLRKSVRKK
Ga0208791_10030188F005195N/AKKTKPLQMGDDMAPAFGSSTYDWAMRMGRSKYTADEWLDHLTSTRKVNFKIFGKPAQKTVREQKRFKYDQGPFAGKEVSVSKEELFDSNLAVFNEAGDLTGGLLYAAKKFGLKLDANEVGAMIKLNPINRLKPIELGVNKGAQEAFDVAAKNARNTVRDLQVKYKDRDNLKTELDQMQYYLKADEGIPSRSAMRDVNESLRMLQKELSIDEKKALNKVIGEVNNKIGPMQATKTRYGNETNYTLQGGKDYRETIFTLPEDIPTNASLRNKGGHFGDEIGDVNNIYHIRYDTRFTPDGKKVFMINEIQSDVNQSVAKSMTKAQQLSGEQRLNPFNADIELNLLVGQRGRMLKDLDEAVARNEFGRVNAISASMKDINTKLKRLTTQRNTYSDTNKDYFPMVEADSYGDHAIKYLMQKAARENVDYVAVAPFDKVSFRQGYKAGNERFYGYANGKGIGKKGKAVIPDVMGKNARFYGSTAGPTKISLSDPTKPYKSVSSDNFKYPKEHPLKGKEIKSTYHSSSGMNPEKGTKNIPEGDPRLYFDAYAIKVVPLMRNTQKTYKSKGGLVVDMFKPIRYN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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