NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208298_1000163

Scaffold Ga0208298_1000163


Overview

Basic Information
Taxon OID3300025084 Open in IMG/M
Scaffold IDGa0208298_1000163 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30298
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001711Metagenome / Metatranscriptome648Y
F040330Metagenome162Y
F040673Metagenome / Metatranscriptome161Y
F097161Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208298_10001632F001711AGGAGMAKVIAEKANEIESSPKQVEIKHTKVMQNASGNNVTVIDFIETKGVDEAISEAEAQLVTAEARVAELEADIVEYKAIKG
Ga0208298_100016325F097161GAGMEKEKQIDDTISVNIYYSFDEETGYYLDTEGITDEFMSRLGEIEDDISELNHLRDEHLRLKHMEG
Ga0208298_100016326F040330AGGAGMSDAEKAFKLQEKIANLIDKLDELGFEYMYFNNISSIRRKRDYGKRKTNR
Ga0208298_100016328F040673GGAGMSKDIKAHVETDSEYAKRVSKIDMDDMWVCDYCGTEEVDEKAWVNMNTLEVTECVDDTPRWCNICNDEVAPMTYFDWCEKIAEECGGNKDKYDKITAGSRM
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