NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208298_1002912

Scaffold Ga0208298_1002912


Overview

Basic Information
Taxon OID3300025084 Open in IMG/M
Scaffold IDGa0208298_1002912 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5469
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027054Metagenome / Metatranscriptome196N
F034391Metagenome / Metatranscriptome175N
F049006Metagenome / Metatranscriptome147N
F054012Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0208298_100291212F027054N/AMAKQKKETSRHWTVELNVGSKRNMGKLKHSKSSGYRYAYHDLNHVREKVKNRFDGGSGNIIKSMFEFTGEYNDEVEKSFYIAFSFYGNIETFKEEDGLEGEYMAFNDRKILEDKLLILCMELEQECIAYNIKEWTSSTFYPTGKQDLIYHPNYDGEQMIFEDEYFMTFGYHKLSSFEQLHKA
Ga0208298_100291214F034391N/AMRTKFASQIDNKLLEGVLDYMANELKGEFGFETLDAEDKLDVIALFVDNPTSYETPYLHSIETTDTEVVSSRKKSNVEILQDLSNYTRYDG
Ga0208298_10029123F054012N/AMQTIKYNKSKQTYTIKTLSKNKQIIQLEILTKLNNKTQKLLNLTNKFHTTSFLPNFVKINNLYYKQEFDFEYAN
Ga0208298_10029129F049006N/AMTKPEFIDVCTRHGVDQWVVMDDLLLNGKQHPHDLTVNDLNEFMWSTY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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