Scaffold Ga0208298_1005402

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208298_1005402

Scaffold Ga0208298_1005402

Overview

Basic Information
Taxon OID	3300025084 Open in IMG/M
Scaffold ID	Ga0208298_1005402 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3601
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002528	Metagenome / Metatranscriptome	551	Y
F005945	Metagenome	385	Y
F008547	Metagenome / Metatranscriptome	331	Y
F032086	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208298_100540211	F002528	AGGAG	MKKTPTKKTSNHTSSRSTPNAPASTAAIDLNSDLPIIRIVSEEEEMHVKMELEMEDETHDMLVKWGKEVASDEDYIRIALDAGIREAVDALDNKQE
Ga0208298_100540212	F005945	N/A	MNINDQTDTFQYELAKLIYRFKSEYDINDYTIAGCLDFAKLSVLTETDDVIFTGELTEEIDNEEDTDEEDIQPHF
Ga0208298_10054023	F032086	N/A	MTSNNQVTDFLDMNDLCDDSLEALIQHYLSLKHKMPDNITVRERLLELEREQFNREKQQTNTTNE
Ga0208298_10054024	F008547	GAGG	MSVTIYLTDHHGKQIAFFYRIDNERYSLTPQLLWCCRNYPEYQGTAESKEHFIEQAKGVIKELNRSPKACKDCGLTNPKMEAQDTCPECLINDQ

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