NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208792_1040887

Scaffold Ga0208792_1040887


Overview

Basic Information
Taxon OID3300025085 Open in IMG/M
Scaffold IDGa0208792_1040887 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)892
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016224Metagenome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0208792_10408871F016224N/AYMKAVSNTPIADTSTFMQRRLQLGGLNSFTGALVLGGSAAVNPLAPALFILLGRRAGQILTDPIAMRAFNDALNPDEQIKLLMGQKVGEGVPGVLGVGRRFFKGRDIQTAANVLQKPSVIGRLGLTQKREAFARLMNYLRDNEWGAQDIPDIDFKNATPEEITERMQQIDALVPQPLYNEKTLPKKNFEIMFAQDFSGSSGNLQEDNNAVDFLRAATTTEAAINEEEAPIENIEKTMVTEDIQLEDPVEAAQAPVPPATGQVNPQQFQALFPNDPTGAAIAQRGVKRG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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