Scaffold Ga0208157

Basic Information
Taxon OID	3300025086 Open in IMG/M
Scaffold ID	Ga0208157_1000173 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025086 Open in IMG/M

Scaffold ID

Ga0208157_1000173 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41226
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (82.69%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

41226

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (82.69%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	90
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F018479	Metagenome / Metatranscriptome	235	Y
F028814	Metagenome / Metatranscriptome	190	Y
F103099	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100017338	F103099	N/A	VGEQGEKLIRFFYESKREEEKTLYIVREAQQWEQQQGADFFVVNNRLGTKYFEVKTDTQAKDTGNVALEIQIVDNDGFKSIGCAMKTFPDFLFYWIHPTTEILYYDPKKLNPWIVDWIADGNHRIVETENKNFFSRSLLIPISELKATGEVRTLNVTEELVEKAIYS
Ga0208157_10001735	F003196	AGG	MYKFNVKEVTIDVSANGTQSSSVNTDGMLLTAIVFPAAMTGTAITFDFSVDGTNFYDVVETNGTEVSYTVSAGNVVRVDPSGWAFASSGFIRLTSGSTEAADRDIKLIFRTA
Ga0208157_10001736	F018479	AGGAGG	MSATIGDLIDRTYREYLEPMDDLTSYTTLGSTISASATTLNFNGALLSIEEEDAMDAGAIVEIGQELMICTDLNAVTNTLTVTRGARGTTAVQHLADSIIKIAPVFPRKNVFDAISDQIHNLYPTLFAVETVSVNAATGYTILGAHGTDQDNNNYLVAPLKAISQYTDFSAGSDSTGIQYRGVQVELIDLPNPFTYVDNAGTSRTKTYNNGPNVVHAVQTYNIASGHVVYITFKKKFLDVRDYDSDGDIEDTTLSQIGLETEYEPIIMTGVAAQLMSGRDIPTATADYISDQMGVTNFPVESASRIRNSLLAYQRALIQQARKDLRARYPEPVSINSISYG
Ga0208157_10001739	F028814	GGA	MGILMMLKEGGSLGIDTIGNLPIDEDIDLLPDTGTVSLNVDLQLMLWSDTGFALQYLDVDEMLLLGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208157_1000173

Overview

Ecosystem & Geography

Associated Families

Sequences