NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1000173

Scaffold Ga0208157_1000173


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1000173 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41226
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (82.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003196Metagenome / Metatranscriptome501Y
F018479Metagenome / Metatranscriptome235Y
F028814Metagenome / Metatranscriptome190Y
F103099Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100017338F103099N/AVGEQGEKLIRFFYESKREEEKTLYIVREAQQWEQQQGADFFVVNNRLGTKYFEVKTDTQAKDTGNVALEIQIVDNDGFKSIGCAMKTFPDFLFYWIHPTTEILYYDPKKLNPWIVDWIADGNHRIVETENKNFFSRSLLIPISELKATGEVRTLNVTEELVEKAIYS
Ga0208157_10001735F003196AGGMYKFNVKEVTIDVSANGTQSSSVNTDGMLLTAIVFPAAMTGTAITFDFSVDGTNFYDVVETNGTEVSYTVSAGNVVRVDPSGWAFASSGFIRLTSGSTEAADRDIKLIFRTA
Ga0208157_10001736F018479AGGAGGMSATIGDLIDRTYREYLEPMDDLTSYTTLGSTISASATTLNFNGALLSIEEEDAMDAGAIVEIGQELMICTDLNAVTNTLTVTRGARGTTAVQHLADSIIKIAPVFPRKNVFDAISDQIHNLYPTLFAVETVSVNAATGYTILGAHGTDQDNNNYLVAPLKAISQYTDFSAGSDSTGIQYRGVQVELIDLPNPFTYVDNAGTSRTKTYNNGPNVVHAVQTYNIASGHVVYITFKKKFLDVRDYDSDGDIEDTTLSQIGLETEYEPIIMTGVAAQLMSGRDIPTATADYISDQMGVTNFPVESASRIRNSLLAYQRALIQQARKDLRARYPEPVSINSISYG
Ga0208157_10001739F028814GGAMGILMMLKEGGSLGIDTIGNLPIDEDIDLLPDTGTVSLNVDLQLMLWSDTGFALQYLDVDEMLLLGA

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