NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1000214

Scaffold Ga0208157_1000214


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1000214 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36753
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017658Metagenome239Y
F033841Metagenome / Metatranscriptome176N
F034215Metagenome / Metatranscriptome175Y
F070220Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100021414F017658AGGMEELEKETQAMLKQINIRKIEKTNNAKKRIAELKKLIKFWEQDL
Ga0208157_100021416F070220N/AMKCTKCGSQDIKVRETIYRKAEQTKGFRNKSSTPYVYRRRVCSCGHRFTTREYTIPDLIAFGKQGYLEMIDDLMPNK
Ga0208157_100021419F033841AGGMEELKPETIKIVTPNPTNFRYSYLVTPDEYKGVRKYKAECLIRKGTMMKDEMGKEVDAVEHIFEQLEGLLERWKVALKEHYPDRKFSLTKNKHGEPSLPYFLEDDYLVIRTSKKAGGVKQNGDVWTNPPVTFWANEDPLRLMTEEEKKEYEKISPSLEGQMSMKCSGYDAGANGVGIRCQPLQVIVRRHAEWTGSPDFEAEAQPSYEEKRTASSAADF
Ga0208157_100021428F034215GGAGGMPSKKPSTKKETPENAPEQAIVSELGVNETNPVPEKSGDVVTGHGNTIHYS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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