Basic Information | |
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Taxon OID | 3300025086 Open in IMG/M |
Scaffold ID | Ga0208157_1000342 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26792 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (6.98%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 90 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011351 | Metagenome | 292 | Y |
F017932 | Metagenome | 238 | Y |
F025720 | Metagenome / Metatranscriptome | 200 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208157_100034231 | F025720 | N/A | MAWKLKKEWEGKSIDSIRIPLDDLSQPQIAKLREDVRNNLFIEDKPKKKKKDGLGA |
Ga0208157_100034237 | F011351 | N/A | MELKKYIENTTKIIMPSIDHLQLVEYKDKELDFAYGMQEYHTSFKRMLKEIIRIIWR |
Ga0208157_10003425 | F017932 | N/A | LKAKRTFFNSRNERLFWDYTDTNNRLFTILFDSGAELSFILRDLTKNDNIENYIYKKLHNRFSNIIEIDISKISSVEYNLMKLKNIPSVIKIC |
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