Scaffold Ga0208157_1000393

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208157_1000393

Scaffold Ga0208157_1000393

Overview

Basic Information
Taxon OID	3300025086 Open in IMG/M
Scaffold ID	Ga0208157_1000393 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	24576
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (18.60%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011351	Metagenome	292	Y
F017932	Metagenome	238	Y
F025720	Metagenome / Metatranscriptome	200	Y
F077934	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100039330	F025720	N/A	MAWKLKKEYEGKSIDSLNIPLNDLTQKQIEGLNEGVRNNLFIQEKPKKKKDVQIEG
Ga0208157_100039336	F011351	N/A	MELKKYIEATSDLIIPSIDHLQLVDYKDKELDFAYGLQEYHTSFIRMLKEIIKILWR
Ga0208157_100039341	F077934	AGG	MQSKWGWYNVLYSLANNILDIEKITRIPILETLTYLAFTQDHNNKQRNNYDNI
Ga0208157_10003936	F017932	AGAAGG	LKAKRTFFNSRKDRLYDNYIDTNNHLWIILFDSGAELSFILRDLKKDNSVINYIYKKLHSRFGNIMDIETSRISNVEYNLMKQANIPSIIKIC

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